species:   Clros
pid:       PID2250
parent:    cro-mir-45
paralog:   
locus:     CADEHS020000001.2:3000662-3000739
matures:   ['UGCAGGGCUCUUUUGGG', 'UUGGAGAGUGAGACAGG']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000001.2:3000662-3000739

1 out of bounds
12 alignments
12 proper strand
10 stranded perfect matches

    ****************                                         **************** 
UUAUAUUGGAGAGUGAGACAGGACCAACGGGCUUGCUGGAUUAGCAUGGGUCAUUGAUUACUGCAGGGCUCUUUUGGG
.......(((((((....(((...(((.((.(((((((...))))).)).)).)))....)))....)))))))....
-------------------------------------------------------------UGCAGGGCUCUUUUGGG l=17 a=0 c
-----UUGGAGAGUGAGACAGG-------------------------------------------------------- l=17 a=0 c*
---------------------------------------------------------------CAGGGCUCUUUUGG- l=14 a=4 ma
------UGGAGAGUGAGACA---------------------------------------------------------- l=14 a=0 ma*

----------------------------------------------------------------AGGGCUCUUUUGGG l=14 a=1 
---------------------------------------------------------------CAGGGCUCUUUU--- l=12 a=1 
---------------------------------------------------------------CAGGGCUCUUUUGG- l=14 a=4 (ma)
---------------------------------------------------------------CAGGGCUCUUUUGGG l=15 a=3 
-------------------------------------------------------------UaCAGGGCUCUUUUGGG l=17 a=2 
-------------UGAGACAGGACCAACGGGC---------------------------------------------- l=19 a=1 

mb-01110
ax-1011001
ku-01
ss-101011101110
fn-111
